| Pos | Rider | Manufacturer | Time/Gap |
|---|---|---|---|
| 1 | Shinya Nakano |
|
48 minutes 52.950 seconds |
| 2 | Tohru Ukawa FL |
|
+2.697s |
| 3 | Loris Capirossi |
|
+9.260s |
| 4 | Franco Battaini P |
|
+11.895s |
| 5 | Daijiro Kato |
|
+13.793s |
| 6 | Tatsuya Yamaguchi |
|
+14.264s |
| 7 | Valentino Rossi |
|
+21.092s |
| 8 | Tomomi Manako |
|
+24.485s |
| 9 | Marcellino Lucchi |
|
+45.594s |
| 10 | Anthony West | TSR-Honda | +49.724s |
| 11 | Naoki Matsudo |
|
+67.293s |
| 12 | Roberto Rolfo |
|
+71.813s |
| 13 | David García |
|
+75.851s |
| 14 | Fonsi Nieto |
|
+77.806s |
| 15 | Tekkyu Kayo | TSR-Honda | +78.400s |
| 16 | Masaki Tokudome | TSR-Honda | +79.374s |
| 17 | Sebastián Porto |
|
+88.624s |
| 18 | Alex Hofmann | TSR-Honda | +100.318s |
| 19 | Jarno Janssen | TSR-Honda | 1 lap |
| 20 | Ken Eguchi |
|
1 lap |
| 21 | Matías Ríos |
|
1 lap |
| - | Takehiko Kurokawa | TSR-Honda | Ret |
| - | Jason Vincent |
|
Ret |
| - | Julien Allemand | TSR-Honda | Ret |
| - | Johan Stigefelt |
|
Ret |
| - | Taro Sekiguchi |
|
Ret |
| - | Olivier Jacque |
|
Ret |
| - | Stefano Perugini |
|
Ret |
| - | Luca Boscoscuro | TSR-Honda | Ret |
| - | Lucas Oliver Bultó |
|
Ret |
| - | Jeremy McWilliams |
|
Ret |